Introduction | Dependencies | Installation | Usage | Built-in Datasets | Data Exploration | Data Merging | Data Transformation from Wider to Longer; Vice Versa | Building Datasets from Source | Data Source Checks | Data Acquisition | Data Import | Important Notes | Reporting Bugs
Package: jpinfect 2024.2026.18
jpinfect: Acquiring and Processing Data from Japan Institute for Health Security
Download and post process the infectious disease case data from Japan Institute for Health Security. Also the package included ready-to-analyse datasets. See the data source website for further details <https://id-info.jihs.go.jp/>.
Authors:
jpinfect_2024.2026.18.tar.gz
jpinfect_2024.2026.18.zip(r-4.7)jpinfect_2024.2026.18.zip(r-4.6)jpinfect_2024.2026.18.zip(r-4.5)
jpinfect_2024.2026.18.tgz(r-4.6-any)jpinfect_2024.2026.18.tgz(r-4.5-any)
jpinfect_2024.2026.18.tar.gz(r-4.7-any)jpinfect_2024.2026.18.tar.gz(r-4.6-any)
jpinfect_2024.2026.18.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
jpinfect/json (API)
| # Install 'jpinfect' in R: |
| install.packages('jpinfect', repos = c('https://tomonorihoshi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tomonorihoshi/jpinfect/issues
Datasets:
- bullet - Bullet report Data
- place_prefecture - Place Prefecture Data
- sex_prefecture - Sex Prefecture Data
Last updated from:ab25d283f1. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 160 | ||
| source / vignettes | OK | 212 | ||
| linux-release-x86_64 | OK | 160 | ||
| macos-release-arm64 | OK | 95 | ||
| macos-oldrel-arm64 | OK | 110 | ||
| windows-devel | OK | 116 | ||
| windows-release | OK | 115 | ||
| windows-oldrel | OK | 122 | ||
| wasm-release | OK | 116 |
Exports:jpinfect_get_bulletjpinfect_get_confirmedjpinfect_mergejpinfect_pivotjpinfect_read_bulletjpinfect_read_confirmedjpinfect_url_bulletjpinfect_url_confirmedprefecture_en
Dependencies:askpassbitbit64cellrangerclicliprcodetoolscpp11crayoncurldigestdplyrfuturefuture.applygenericsglobalsgluehmshttrISOweekjsonlitelifecyclelistenvmagrittrmimeopensslparallellypillarpkgconfigprettyunitsprogresspurrrR6readrreadxlrematchrlangstringistringrsystibbletidyrtidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bullet report Data | bullet |
| Download the bullet reports from the Japan Institute for Health Security (JIHS) | jpinfect_get_bullet |
| Download the confirmed case datasets from the Japan Institute for Health Security (JIHS) | jpinfect_get_confirmed |
| Merge multiple disease datasets into a unified data table | jpinfect_merge |
| Convert data from wide format to long format for easier analysis | jpinfect_pivot |
| Import one week or more weeks of bullet reports | jpinfect_read_bullet |
| Read Confirmed Case Reports from File or Directory | jpinfect_read_confirmed |
| Display Infectious Diseases Weekly Report (IDWR) URLs | jpinfect_url_bullet |
| Display dataset URLs of Confirmed Cases based on Infectious Diseases Weekly Report (IDWR) | jpinfect_url_confirmed |
| Place Prefecture Data | place_prefecture |
| English Names of Prefectures in Japan | prefecture_en |
| Sex Prefecture Data | sex_prefecture |
